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API Reference
Preprocessing:
pp
cellspec.pp.load_vcf
cellspec.pp.annotate_contexts
cellspec.pp.filter_variants
cellspec.pp.filter_cells
cellspec.pp.filter_by_coverage
cellspec.pp.filter_to_snps
Tools:
tl
cellspec.tl.compute_spectrum
cellspec.tl.compute_spectrum_from_mask
cellspec.tl.normalize_spectrum
cellspec.tl.compute_callable_sites
cellspec.tl.private_mutations
Plotting:
pl
cellspec.pl.spectrum
cellspec.pl.spectrum_from_df
cellspec.pl.compare_spectra
Tutorials
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Contributing guide
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