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  • API Reference
    • Preprocessing: pp
      • cellspec.pp.load_vcf
      • cellspec.pp.annotate_contexts
      • cellspec.pp.filter_variants
      • cellspec.pp.filter_cells
      • cellspec.pp.filter_by_coverage
      • cellspec.pp.filter_to_snps
    • Tools: tl
      • cellspec.tl.compute_spectrum
      • cellspec.tl.compute_spectrum_from_mask
      • cellspec.tl.normalize_spectrum
      • cellspec.tl.compute_callable_sites
      • cellspec.tl.private_mutations
    • Plotting: pl
      • cellspec.pl.spectrum
      • cellspec.pl.spectrum_from_df
      • cellspec.pl.compare_spectra
  • Tutorials
  • Changelog
  • Contributing guide
  • References

Index

A | C | F | L | M | N | P | S

A

  • annotate_contexts() (in module cellspec.pp)

C

  • cellspec.pl
    • module, [1]
  • cellspec.pp
    • module, [1]
  • cellspec.tl
    • module, [1]
  • compare_spectra() (in module cellspec.pl)
  • compute_callable_sites() (in module cellspec.tl)
  • compute_spectrum() (in module cellspec.tl)
  • compute_spectrum_from_mask() (in module cellspec.tl)

F

  • filter_by_coverage() (in module cellspec.pp)
  • filter_cells() (in module cellspec.pp)
  • filter_to_snps() (in module cellspec.pp)
  • filter_variants() (in module cellspec.pp)

L

  • load_vcf() (in module cellspec.pp)

M

  • module
    • cellspec.pl, [1]
    • cellspec.pp, [1]
    • cellspec.tl, [1]

N

  • normalize_spectrum() (in module cellspec.tl)

P

  • private_mutations() (in module cellspec.tl)

S

  • spectrum() (in module cellspec.pl)
  • spectrum_from_df() (in module cellspec.pl)

By Dustin Mullaney

© Copyright 2026, Dustin Mullaney..